Cancer-miRNA Regulatory Network

Compendium of miRNA Target Genes

Download FIRM

Citation

Genes Targeted by hsa-mir-556-3p in MUC Ovarian Hendrix Cluster 0 Table contains all genes in the MUC Ovarian Hendrix cluster number 0. If a gene harbors a predicted miRNA binding site by one of the three inference methods it is displayed in the final column: M = Weeder-miRvestigator predicted site, P = PITA predicted site and T = TargetScan predicted site. Entrez ID Symbol Description hsa-mir-556-3p 1040 CDS1 CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 1 [Source:HGNC Symbol;Acc:1800] zzz999 8030 CCDC6 coiled-coil domain containing 6 [Source:HGNC Symbol;Acc:18782] P T 4281 MID1 midline 1 (Opitz/BBB syndrome) [Source:HGNC Symbol;Acc:7095] zzz999 373863 DND1 dead end homolog 1 (zebrafish) [Source:HGNC Symbol;Acc:23799] zzz999 64110 MAGEF1 melanoma antigen family F, 1 [Source:HGNC Symbol;Acc:29639] zzz999 1325 CORT cortistatin [Source:HGNC Symbol;Acc:2257] zzz999 5366 PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1 [Source:HGNC Symbol;Acc:9108] zzz999 6635 SNRPE small nuclear ribonucleoprotein polypeptide E [Source:HGNC Symbol;Acc:11161] zzz999 116987 AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 [Source:HGNC Symbol;Acc:16922] zzz999 51030 FAM18B1 family with sequence similarity 18, member B1 [Source:HGNC Symbol;Acc:20399] zzz999 54942 C9orf6 chromosome 9 open reading frame 6 [Source:HGNC Symbol;Acc:1364] zzz999 56950 SMYD2 SET and MYND domain containing 2 [Source:HGNC Symbol;Acc:20982] zzz999 7082 TJP1 tight junction protein 1 (zona occludens 1) [Source:HGNC Symbol;Acc:11827] zzz999 8531 CSDA cold shock domain protein A [Source:HGNC Symbol;Acc:2428] P T 54664 TMEM106B transmembrane protein 106B [Source:HGNC Symbol;Acc:22407] P T 9317 PTER phosphotriesterase related [Source:HGNC Symbol;Acc:9590] T 139322 APOOL apolipoprotein O-like [Source:HGNC Symbol;Acc:24009] zzz999 8351 HIST1H3J histone cluster 1, H3j [Source:HGNC Symbol;Acc:4774] zzz999 22976 PAXIP1 PAX interacting (with transcription-activation domain) protein 1 [Source:HGNC Symbol;Acc:8624] zzz999 6468 FBXW4 F-box and WD repeat domain containing 4 [Source:HGNC Symbol;Acc:10847] zzz999 9733 SART3 squamous cell carcinoma antigen recognized by T cells 3 [Source:HGNC Symbol;Acc:16860] zzz999 4848 CNOT2 CCR4-NOT transcription complex, subunit 2 [Source:HGNC Symbol;Acc:7878] P T 8204 NRIP1 nuclear receptor interacting protein 1 [Source:HGNC Symbol;Acc:8001] zzz999 7528 YY1 YY1 transcription factor [Source:HGNC Symbol;Acc:12856] zzz999 442867 BPY2C basic charge, Y-linked, 2C [Source:HGNC Symbol;Acc:18225] zzz999 3070 HELLS helicase, lymphoid-specific [Source:HGNC Symbol;Acc:4861] zzz999 2120 ETV6 ets variant 6 [Source:HGNC Symbol;Acc:3495] zzz999 55638 SYBU syntabulin (syntaxin-interacting) [Source:HGNC Symbol;Acc:26011] zzz999 11260 XPOT exportin, tRNA (nuclear export receptor for tRNAs) [Source:HGNC Symbol;Acc:12826] zzz999 55285 RBM41 RNA binding motif protein 41 [Source:HGNC Symbol;Acc:25617] zzz999 56924 PAK6 p21 protein (Cdc42/Rac)-activated kinase 6 [Source:HGNC Symbol;Acc:16061] zzz999 5529 PPP2R5E protein phosphatase 2, regulatory subunit B', epsilon isoform [Source:HGNC Symbol;Acc:9313] zzz999 27242 TNFRSF21 tumor necrosis factor receptor superfamily, member 21 [Source:HGNC Symbol;Acc:13469] zzz999 9801 MRPL19 mitochondrial ribosomal protein L19 [Source:HGNC Symbol;Acc:14052] T 5584 PRKCI protein kinase C, iota [Source:HGNC Symbol;Acc:9404] T 55607 PPP1R9A protein phosphatase 1, regulatory (inhibitor) subunit 9A [Source:HGNC Symbol;Acc:14946] P T 54505 DHX29 DEAH (Asp-Glu-Ala-His) box polypeptide 29 [Source:HGNC Symbol;Acc:15815] zzz999 7525 YES1 v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1 [Source:HGNC Symbol;Acc:12841] zzz999 3480 IGF1R insulin-like growth factor 1 receptor [Source:HGNC Symbol;Acc:5465] P T 889 KRIT1 KRIT1, ankyrin repeat containing [Source:HGNC Symbol;Acc:1573] zzz999 6637 SNRPG small nuclear ribonucleoprotein polypeptide G [Source:HGNC Symbol;Acc:11163] zzz999 771 CA12 carbonic anhydrase XII [Source:HGNC Symbol;Acc:1371] T 9289 GPR56 G protein-coupled receptor 56 [Source:HGNC Symbol;Acc:4512] zzz999 60412 EXOC4 exocyst complex component 4 [Source:HGNC Symbol;Acc:30389] zzz999 25801 GCA grancalcin, EF-hand calcium binding protein [Source:HGNC Symbol;Acc:15990] zzz999 55270 NUDT15 nudix (nucleoside diphosphate linked moiety X)-type motif 15 [Source:HGNC Symbol;Acc:23063] T 56474 CTPS2 CTP synthase II [Source:HGNC Symbol;Acc:2520] zzz999 2181 ACSL3 acyl-CoA synthetase long-chain family member 3 [Source:HGNC Symbol;Acc:3570] zzz999 4293 MAP3K9 mitogen-activated protein kinase kinase kinase 9 [Source:HGNC Symbol;Acc:6861] zzz999 685 BTC betacellulin [Source:HGNC Symbol;Acc:1121] zzz999 56675 NRIP3 nuclear receptor interacting protein 3 [Source:HGNC Symbol;Acc:1167] zzz999 3012 HIST1H2AE histone cluster 1, H2ae [Source:HGNC Symbol;Acc:4724] zzz999 8202 NCOA3 nuclear receptor coactivator 3 [Source:HGNC Symbol;Acc:7670] zzz999 144699 FBXL14 F-box and leucine-rich repeat protein 14 [Source:HGNC Symbol;Acc:28624] zzz999 490 ATP2B1 ATPase, Ca++ transporting, plasma membrane 1 [Source:HGNC Symbol;Acc:814] zzz999 23608 MKRN1 makorin ring finger protein 1 [Source:HGNC Symbol;Acc:7112] zzz999 5509 PPP1R3D protein phosphatase 1, regulatory (inhibitor) subunit 3D [Source:HGNC Symbol;Acc:9294] zzz999 10475 TRIM38 tripartite motif containing 38 [Source:HGNC Symbol;Acc:10059] zzz999 54953 C1orf27 chromosome 1 open reading frame 27 [Source:HGNC Symbol;Acc:24299] zzz999 9188 DDX21 DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Source:HGNC Symbol;Acc:2744] zzz999 6874 TAF4 TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa [Source:HGNC Symbol;Acc:11537] zzz999 8932 MBD2 methyl-CpG binding domain protein 2 [Source:HGNC Symbol;Acc:6917] P 66008 TRAK2 trafficking protein, kinesin binding 2 [Source:HGNC Symbol;Acc:13206] zzz999 3052 HCCS holocytochrome c synthase [Source:HGNC Symbol;Acc:4837] zzz999 80144 FRAS1 Fraser syndrome 1 [Source:HGNC Symbol;Acc:19185] zzz999 80218 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit [Source:HGNC Symbol;Acc:29533] zzz999 10447 FAM3C family with sequence similarity 3, member C [Source:HGNC Symbol;Acc:18664] T 5092 PCBD1 pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha [Source:HGNC Symbol;Acc:8646] zzz999 5272 SERPINB9 serpin peptidase inhibitor, clade B (ovalbumin), member 9 [Source:HGNC Symbol;Acc:8955] T 64770 CCDC14 coiled-coil domain containing 14 [Source:HGNC Symbol;Acc:25766] T 5927 KDM5A lysine (K)-specific demethylase 5A [Source:HGNC Symbol;Acc:9886] zzz999 1571 CYP2E1 cytochrome P450, family 2, subfamily E, polypeptide 1 [Source:HGNC Symbol;Acc:2631] zzz999 1758 DMP1 dentin matrix acidic phosphoprotein 1 [Source:HGNC Symbol;Acc:2932] T 23554 TSPAN12 tetraspanin 12 [Source:HGNC Symbol;Acc:21641] zzz999 55847 CISD1 CDGSH iron sulfur domain 1 [Source:HGNC Symbol;Acc:30880] zzz999 51760 SYT17 synaptotagmin XVII [Source:HGNC Symbol;Acc:24119] zzz999 23434 C3orf27 chromosome 3 open reading frame 27 [Source:HGNC Symbol;Acc:17099] zzz999 3231 HOXD1 homeobox D1 [Source:HGNC Symbol;Acc:5132] T 26286 ARFGAP3 ADP-ribosylation factor GTPase activating protein 3 [Source:HGNC Symbol;Acc:661] zzz999 928 CD9 CD9 molecule [Source:HGNC Symbol;Acc:1709] zzz999 9422 ZNF264 zinc finger protein 264 [Source:HGNC Symbol;Acc:13057] T 29083 GTPBP8 GTP-binding protein 8 (putative) [Source:HGNC Symbol;Acc:25007] zzz999 23137 SMC5 structural maintenance of chromosomes 5 [Source:HGNC Symbol;Acc:20465] P T 2104 ESRRG estrogen-related receptor gamma [Source:HGNC Symbol;Acc:3474] T 6528 SLC5A5 solute carrier family 5 (sodium iodide symporter), member 5 [Source:HGNC Symbol;Acc:11040] zzz999

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.